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Plot signature score on embedding coordinates

Source: R/plot_embedding_score.R
plot_embedding_score.Rd

Plot signature score on embedding coordinates

Usage

plot_embedding_score(
  score,
  signature = NULL,
  embedding = NULL,
  object = NULL,
  reduction = "umap",
  split.by = NULL,
  point_size = 1.1,
  alpha = 0.9,
  palette = "gleam_continuous",
  theme_params = list()
)

Arguments

score

gleam_score object.

signature

Signature name.

embedding

Embedding matrix with at least 2 columns.

object

Optional Seurat object.

reduction

Reduction name used when embedding is NULL.

split.by

Optional metadata column for faceting.

point_size

Point size.

alpha

Point alpha.

palette

Continuous palette name or custom colors.

theme_params

Optional list passed to gleam_theme().

Value

A ggplot object.