Plot signature score on trajectory embedding — plot_trajectory_score • GLEAM

Plot signature score on trajectory embedding

Usage

plot_trajectory_score(
  score,
  signature = NULL,
  embeddings = NULL,
  reduction = "umap",
  object = NULL,
  point_size = 1.1,
  alpha = 0.9,
  palette = "gleam_continuous",
  theme_params = list()
)

Arguments

score: gleam_score object.
signature: Signature name.
embeddings: Embedding matrix with at least 2 columns.
reduction: Reduction name for Seurat extraction when embeddings is NULL.
object: Optional Seurat object for reduction extraction.
point_size: Point size.
alpha: Point alpha.
palette: Continuous palette name or custom colors.
theme_params: Optional list passed to gleam_theme().

Value

A ggplot object.