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Changelog

Source: NEWS.md

AEGIS 0.1.0

  • Initial MVP release.
  • Added Seurat-first data loading for Human Lymph Node 10x Visium assets.
  • Added simulated deconvolution, audit, comparison, plotting, and report pipeline.
  • Added example data, vignettes, and test coverage for core workflow.
  • Updated README with enlarged logo, devtools installation, citation text, and repository link.
  • Added tutorial expansion, spatial slice example figure, and pkgdown/R-CMD-check workflows.
  • Added unified run_aegis() one-call workflow for single-sample and multi-sample usage.
  • Updated tutorials to include multi-sample end-to-end examples.
  • P7 pre-release hardening: added integration workflow tests (simulated/import/multi-sample), docs consistency checks, and CI smoke workflow.
  • Added robust tutorial link fallbacks and a reproducible README figure regeneration script.
  • Improved importer error messages for ambiguous spot IDs and missing numeric cell-type columns.